3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
6D9J|1|2|A|628
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_032 not in the Motif Atlas
Homologous match to IL_4V88_415
Geometric discrepancy: 0.3091
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6D9J|1|2|G|611
6D9J|1|2|U|612
6D9J|1|2|G|613
6D9J|1|2|C|614
6D9J|1|2|C|615
6D9J|1|2|A|616
6D9J|1|2|G|617
*
6D9J|1|2|C|624
6D9J|1|2|G|625
6D9J|1|2|G|626
6D9J|1|2|U|627
6D9J|1|2|A|628
6D9J|1|2|A|629
6D9J|1|2|U|630
6D9J|1|2|U|631
6D9J|1|2|C|632

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 9
eEF2
Chain EE
uS3
Chain YY
uS12
Chain ff
eS30

Coloring options:


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