IL_6D9J_033

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_033 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.3088

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6D9J|1|2|G|665
6D9J|1|2|U|666
6D9J|1|2|U|667
6D9J|1|2|A|668
6D9J|1|2|A|669
6D9J|1|2|A|670
6D9J|1|2|A|671
*
6D9J|1|2|U|1161
6D9J|1|2|C|1162

Current chains

Chain 2

18S rRNA

Nearby chains

Chain YY

uS12

Chain bb

eS26