IL_6D9J_048
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_048 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.2574
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6D9J|1|2|G|942
6D9J|1|2|U|943
6D9J|1|2|A|944
6D9J|1|2|U|945
*
6D9J|1|2|A|981
6D9J|1|2|G|982
6D9J|1|2|A|983
6D9J|1|2|C|984
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- uL2
- Chain CC
- eS1
- Chain PP
- uS11
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