3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUAU*AGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_048 not in the Motif Atlas
Homologous match to IL_4V88_432
Geometric discrepancy: 0.2574
The information below is about IL_4V88_432
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

6D9J|1|2|G|942
6D9J|1|2|U|943
6D9J|1|2|A|944
6D9J|1|2|U|945
*
6D9J|1|2|A|981
6D9J|1|2|G|982
6D9J|1|2|A|983
6D9J|1|2|C|984

Current chains

Chain 2
18S rRNA

Nearby chains

Chain A
uL2
Chain CC
eS1
Chain PP
uS11

Coloring options:


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