3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGG*UCUGUGA
Length
10 nucleotides
Bulged bases
6D9J|1|2|U|1494, 6D9J|1|2|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_064 not in the Motif Atlas
Homologous match to IL_4V88_451
Geometric discrepancy: 0.2487
The information below is about IL_4V88_451
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_97255.1
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6D9J|1|2|U|1333
6D9J|1|2|G|1334
6D9J|1|2|G|1335
*
6D9J|1|2|U|1492
6D9J|1|2|C|1493
6D9J|1|2|U|1494
6D9J|1|2|G|1495
6D9J|1|2|U|1496
6D9J|1|2|G|1497
6D9J|1|2|A|1498

Current chains

Chain 2
18S rRNA

Nearby chains

Chain EE
uS3
Chain LL
eS10
Chain VV
uS10
Chain ee
eS29

Coloring options:


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