IL_6D9J_176

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_176 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1799

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6D9J|1|5|G|2358
6D9J|1|5|U|2359
6D9J|1|5|A|2360
6D9J|1|5|G|2361
6D9J|1|5|U|2362
6D9J|1|5|A|2363
6D9J|1|5|G|2364
*
6D9J|1|5|C|3858
6D9J|1|5|G|3859
6D9J|1|5|A|3860
6D9J|1|5|A|3861
6D9J|1|5|A|3862
6D9J|1|5|C|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain P

uL22