IL_6D9J_176
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_176 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.1799
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6D9J|1|5|G|2358
6D9J|1|5|U|2359
6D9J|1|5|A|2360
6D9J|1|5|G|2361
6D9J|1|5|U|2362
6D9J|1|5|A|2363
6D9J|1|5|G|2364
*
6D9J|1|5|C|3858
6D9J|1|5|G|3859
6D9J|1|5|A|3860
6D9J|1|5|A|3861
6D9J|1|5|A|3862
6D9J|1|5|C|3863
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
Coloring options: