IL_6D9J_189
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_189 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.2695
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6D9J|1|5|A|2832
6D9J|1|5|A|2833
6D9J|1|5|C|2834
6D9J|1|5|A|2835
6D9J|1|5|A|2836
6D9J|1|5|U|2837
6D9J|1|5|G|2838
*
6D9J|1|5|C|3850
6D9J|1|5|U|3851
6D9J|1|5|A|3852
6D9J|1|5|U|3853
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain P
- uL22
- Chain d
- eL31
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