3D structure

PDB id
6D9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAG*CGUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6D9J_217 not in the Motif Atlas
Geometric match to IL_5TBW_099
Geometric discrepancy: 0.2803
The information below is about IL_5TBW_099
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_71241.2
Basepair signature
cWW-cWW-tSH-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6D9J|1|5|C|4243
6D9J|1|5|A|4244
6D9J|1|5|G|4245
*
6D9J|1|5|C|4263
6D9J|1|5|G|4264
6D9J|1|5|U|4265
6D9J|1|5|G|4266
6D9J|1|5|G|4267

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain D
uL18
Chain J
uL11
Chain T
eL21

Coloring options:


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