IL_6D9J_237
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_237 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.197
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6D9J|1|5|C|4596
6D9J|1|5|U|4597
6D9J|1|5|C|4598
6D9J|1|5|A|4599
6D9J|1|5|G|4600
6D9J|1|5|U|4601
6D9J|1|5|A|4602
6D9J|1|5|C|4603
*
6D9J|1|5|G|4608
6D9J|1|5|G|4609
6D9J|1|5|A|4610
6D9J|1|5|A|4611
6D9J|1|5|C|4612
6D9J|1|5|C|4613
6D9J|1|5|G|4614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- eEF2
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- uL14
- Chain m
- eL40
Coloring options: