IL_6D9J_253

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_253 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.2773

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6D9J|1|5|G|5000
6D9J|1|5|U|5001
6D9J|1|5|U|5002
*
6D9J|1|5|G|5045
6D9J|1|5|U|5046
6D9J|1|5|C|5047
6D9J|1|5|A|5048
6D9J|1|5|G|5049
6D9J|1|5|C|5050

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain d

eL31