IL_6D9J_280
3D structure
- PDB id
- 6D9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6D9J|1|2|C|1331, 6D9J|1|2|U|1494, 6D9J|1|2|G|1497
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6D9J_280 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.164
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6D9J|1|2|U|1329
6D9J|1|2|G|1330
6D9J|1|2|C|1331
6D9J|1|2|A|1332
6D9J|1|2|U|1333
6D9J|1|2|G|1334
6D9J|1|2|G|1335
*
6D9J|1|2|U|1492
6D9J|1|2|C|1493
6D9J|1|2|U|1494
6D9J|1|2|G|1495
6D9J|1|2|U|1496
6D9J|1|2|G|1497
6D9J|1|2|A|1498
6D9J|1|2|U|1499
6D9J|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 9
- eEF2
- Chain EE
- uS3
- Chain LL
- eS10
- Chain VV
- uS10
- Chain ee
- eS29
Coloring options: