IL_6D9J_335

3D structure

PDB id

6D9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6D9J|1|2|G|970

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D9J_335 not in the Motif Atlas

Geometric match to IL_5J7L_035

Geometric discrepancy: 0.3223

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6D9J|1|2|G|952
6D9J|1|2|C|953
6D9J|1|2|U|954
6D9J|1|2|A|955
6D9J|1|2|G|956
*
6D9J|1|2|C|967
6D9J|1|2|U|968
6D9J|1|2|U|969
6D9J|1|2|G|970
6D9J|1|2|G|971
6D9J|1|2|A|972
6D9J|1|2|C|973
6D9J|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain CC

eS1

Chain PP

uS11