IL_6DNC_025

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_025 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1801

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6DNC|1|A|C|569
6DNC|1|A|G|570
6DNC|1|A|U|571
6DNC|1|A|A|572
6DNC|1|A|A|573
6DNC|1|A|A|574
6DNC|1|A|G|575
*
6DNC|1|A|C|880
6DNC|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain DB

30S ribosomal protein S17

Chain YA

30S ribosomal protein S12