IL_6DNC_033
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_033 not in the Motif Atlas
- Homologous match to IL_5J7L_034
- Geometric discrepancy: 0.1001
- The information below is about IL_5J7L_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
6DNC|1|A|A|673
6DNC|1|A|G|674
6DNC|1|A|A|675
6DNC|1|A|A|676
6DNC|1|A|U|677
6DNC|1|A|U|678
*
6DNC|1|A|A|712
6DNC|1|A|G|713
6DNC|1|A|G|714
6DNC|1|A|A|715
6DNC|1|A|A|716
6DNC|1|A|U|717
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain EB
- 30S ribosomal protein S18
- Chain F
- 50S ribosomal protein L2
- Chain HB
- 30S ribosomal protein S21
- Chain SA
- 30S ribosomal protein S6
- Chain XA
- 30S ribosomal protein S11
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