IL_6DNC_056

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_056 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1195

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6DNC|1|A|C|1303
6DNC|1|A|G|1304
6DNC|1|A|G|1305
6DNC|1|A|A|1306
6DNC|1|A|U|1307
6DNC|1|A|U|1308
*
6DNC|1|A|A|1329
6DNC|1|A|U|1330
6DNC|1|A|G|1331
6DNC|1|A|A|1332
6DNC|1|A|A|1333
6DNC|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain ZA

30S ribosomal protein S13