IL_6DNC_134

3D structure

PDB id

6DNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6DNC|1|B|A|1801, 6DNC|1|B|C|1816, 6DNC|1|B|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DNC_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1163

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6DNC|1|B|U|1798
6DNC|1|B|G|1799
6DNC|1|B|C|1800
6DNC|1|B|A|1801
6DNC|1|B|A|1802
6DNC|1|B|A|1803
6DNC|1|B|C|1804
*
6DNC|1|B|G|1813
6DNC|1|B|G|1814
6DNC|1|B|A|1815
6DNC|1|B|C|1816
6DNC|1|B|G|1817
6DNC|1|B|U|1818
6DNC|1|B|A|1819
6DNC|1|B|U|1820
6DNC|1|B|A|1821

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain F

50S ribosomal protein L2