IL_6DNC_165
3D structure
- PDB id
- 6DNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6DNC|1|B|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DNC_165 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.1157
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6DNC|1|B|C|2636
6DNC|1|B|U|2637
6DNC|1|B|G|2638
6DNC|1|B|A|2639
6DNC|1|B|G|2640
*
6DNC|1|B|C|2774
6DNC|1|B|G|2775
6DNC|1|B|A|2776
6DNC|1|B|G|2777
6DNC|1|B|A|2778
6DNC|1|B|U|2779
6DNC|1|B|G|2780
6DNC|1|B|A|2781
6DNC|1|B|G|2782
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L13
Coloring options: