IL_6DTI_019

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6DTI|1|A|A|516, 6DTI|1|A|U|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DTI_019 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1455

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6DTI|1|A|G|499
6DTI|1|A|U|500
6DTI|1|A|G|501
6DTI|1|A|C|502
6DTI|1|A|C|503
6DTI|1|A|A|504
6DTI|1|A|G|505
*
6DTI|1|A|C|512
6DTI|1|A|G|513
6DTI|1|A|G|514
6DTI|1|A|U|515
6DTI|1|A|A|516
6DTI|1|A|A|517
6DTI|1|A|U|518
6DTI|1|A|A|519
6DTI|1|A|C|520

Current chains

Chain A

16s rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12

Chain W

mRNA A-site fragment

Chain X

tRNA ASL Escherichia coli Arg2