IL_6DTI_050
3D structure
- PDB id
- 6DTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DTI_050 not in the Motif Atlas
- Geometric match to IL_4LFB_055
- Geometric discrepancy: 0.0918
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6DTI|1|A|C|1280
6DTI|1|A|G|1281
6DTI|1|A|G|1282
6DTI|1|A|A|1283
6DTI|1|A|U|1284
6DTI|1|A|U|1285
*
6DTI|1|A|A|1306
6DTI|1|A|U|1307
6DTI|1|A|G|1308
6DTI|1|A|A|1309
6DTI|1|A|A|1310
6DTI|1|A|G|1311
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S19
- Chain V
- 30S ribosomal protein Thx
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