IL_6EK0_033

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6EK0|1|L5|G|748, 6EK0|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_033 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1805

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6EK0|1|L5|G|745
6EK0|1|L5|A|746
6EK0|1|L5|A|747
6EK0|1|L5|G|748
6EK0|1|L5|G|749
6EK0|1|L5|U|750
6EK0|1|L5|G|751
6EK0|1|L5|G|752
*
6EK0|1|L5|U|911
6EK0|1|L5|G|912
6EK0|1|L5|U|913
6EK0|1|L5|U|914
6EK0|1|L5|A|915
6EK0|1|L5|C|916
6EK0|1|L5|A|917
6EK0|1|L5|G|918
6EK0|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a