IL_6EK0_045

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_045 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3959

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6EK0|1|L5|G|1425
6EK0|1|L5|G|1426
6EK0|1|L5|A|1427
6EK0|1|L5|U|1428
6EK0|1|L5|C|1429
*
6EK0|1|L5|G|1455
6EK0|1|L5|B8Q|1456
6EK0|1|L5|G|1457
6EK0|1|L5|C|1458
6EK0|1|L5|A|1459
6EK0|1|L5|C|1460

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29