IL_6EK0_068

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_068 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2533

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6EK0|1|L5|U|1861
6EK0|1|L5|U|1862
6EK0|1|L5|U|1863
6EK0|1|L5|G|1864
*
6EK0|1|L5|C|1870
6EK0|1|L5|A2M|1871
6EK0|1|L5|G|1872
6EK0|1|L5|A|1873

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29