IL_6EK0_143

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

6EK0|1|L5|U|4634

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_143 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.2946

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6EK0|1|L5|U|4632
6EK0|1|L5|G|4633
6EK0|1|L5|U|4634
6EK0|1|L5|A|4635
6EK0|1|L5|PSU|4636
6EK0|1|L5|OMG|4637
6EK0|1|L5|U|4638
*
6EK0|1|L5|G|4661
6EK0|1|L5|C|4662
6EK0|1|L5|G|4663
6EK0|1|L5|A|4664
6EK0|1|L5|A|4665
6EK0|1|L5|G|4666

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31