IL_6EML_033

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6EML|1|2|A|579, 6EML|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_033 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.4623

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6EML|1|2|G|562
6EML|1|2|U|563
6EML|1|2|G|564
6EML|1|2|C|565
6EML|1|2|C|566
6EML|1|2|A|567
6EML|1|2|G|568
*
6EML|1|2|C|575
6EML|1|2|G|576
6EML|1|2|G|577
6EML|1|2|U|578
6EML|1|2|A|579
6EML|1|2|A|580
6EML|1|2|U|581
6EML|1|2|U|582
6EML|1|2|C|583

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain r

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1