IL_6EML_045

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6EML|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EML_045 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1283

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6EML|1|2|C|874
6EML|1|2|G|875
6EML|1|2|G|876
6EML|1|2|G|877
6EML|1|2|G|878
*
6EML|1|2|C|950
6EML|1|2|A|951
6EML|1|2|A|952
6EML|1|2|G|953

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Y

40S ribosomal protein S13