IL_6ERI_043
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGGAGAAA*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 6ERI|1|AA|A|1232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ERI_043 not in the Motif Atlas
- Geometric match to IL_3U4M_004
- Geometric discrepancy: 0.1346
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
6ERI|1|AA|G|1229
6ERI|1|AA|G|1230
6ERI|1|AA|G|1231
6ERI|1|AA|A|1232
6ERI|1|AA|G|1233
6ERI|1|AA|A|1234
6ERI|1|AA|A|1235
6ERI|1|AA|A|1236
*
6ERI|1|AA|U|1255
6ERI|1|AA|G|1256
6ERI|1|AA|G|1257
6ERI|1|AA|A|1258
6ERI|1|AA|C|1259
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AQ
- 50S ribosomal protein L20, chloroplastic
Coloring options: