IL_6ERI_075

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

6ERI|1|AA|A|1952, 6ERI|1|AA|U|1958, 6ERI|1|AA|C|1977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_075 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1012

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6ERI|1|AA|C|1948
6ERI|1|AA|G|1949
6ERI|1|AA|A|1950
6ERI|1|AA|A|1951
6ERI|1|AA|A|1952
6ERI|1|AA|U|1953
6ERI|1|AA|U|1954
6ERI|1|AA|C|1955
6ERI|1|AA|C|1956
6ERI|1|AA|U|1957
6ERI|1|AA|U|1958
6ERI|1|AA|G|1959
*
6ERI|1|AA|C|1975
6ERI|1|AA|C|1976
6ERI|1|AA|C|1977
6ERI|1|AA|G|1978

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic

Chain Az

Ribosome-recycling factor, chloroplastic

Chain BA

Small subunit ribosomal RNA; SSU rRNA