IL_6ERI_131
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAGAC
- Length
- 16 nucleotides
- Bulged bases
- 6ERI|1|BA|A|481, 6ERI|1|BA|G|483
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ERI_131 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1167
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ERI|1|BA|G|464
6ERI|1|BA|U|465
6ERI|1|BA|G|466
6ERI|1|BA|C|467
6ERI|1|BA|C|468
6ERI|1|BA|A|469
6ERI|1|BA|G|470
*
6ERI|1|BA|C|477
6ERI|1|BA|G|478
6ERI|1|BA|G|479
6ERI|1|BA|U|480
6ERI|1|BA|A|481
6ERI|1|BA|A|482
6ERI|1|BA|G|483
6ERI|1|BA|A|484
6ERI|1|BA|C|485
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain Az
- Ribosome-recycling factor, chloroplastic
- Chain BC
- 30S ribosomal protein S3, chloroplastic
- Chain BL
- 30S ribosomal protein S12, chloroplastic
- Chain BV
- Ribosome-binding factor PSRP1, chloroplastic
Coloring options: