IL_6ERI_145

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_145 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0942

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6ERI|1|BA|G|837
6ERI|1|BA|G|838
6ERI|1|BA|A|839
6ERI|1|BA|G|840
6ERI|1|BA|U|841
6ERI|1|BA|A|842
6ERI|1|BA|C|843
6ERI|1|BA|G|844
*
6ERI|1|BA|U|855
6ERI|1|BA|G|856
6ERI|1|BA|A|857
6ERI|1|BA|A|858
6ERI|1|BA|A|859
6ERI|1|BA|C|860

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S ribosomal protein S12, chloroplastic