IL_6ERI_171
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ERI_171 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.2
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ERI|1|BA|C|1380
6ERI|1|BA|C|1381
6ERI|1|BA|G|1382
6ERI|1|BA|A|1383
6ERI|1|BA|A|1384
6ERI|1|BA|G|1385
*
6ERI|1|BA|C|1416
6ERI|1|BA|G|1417
6ERI|1|BA|A|1418
6ERI|1|BA|A|1419
6ERI|1|BA|G|1420
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AK
- 50S ribosomal protein L14, chloroplastic
- Chain AP
- 50S ribosomal protein L19, chloroplastic
- Chain BT
- 30S ribosomal protein S20, chloroplastic
Coloring options: