IL_6FEC_003
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 6FEC|1|A|A|506
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_003 not in the Motif Atlas
- Geometric match to IL_3PDR_003
- Geometric discrepancy: 0.3589
- The information below is about IL_3PDR_003
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_03676.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6FEC|1|A|C|37
6FEC|1|A|A|38
6FEC|1|A|A|39
6FEC|1|A|A|40
*
6FEC|1|A|U|504
6FEC|1|A|G|505
6FEC|1|A|A|506
6FEC|1|A|C|507
6FEC|1|A|G|508
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4, X isoform
- Chain K
- 40S ribosomal protein S9
Coloring options: