IL_6FEC_030
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUCGCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6FEC|1|A|A|618, 6FEC|1|A|U|620
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_030 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.183
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FEC|1|A|G|601
6FEC|1|A|U|602
6FEC|1|A|C|603
6FEC|1|A|G|604
6FEC|1|A|C|605
6FEC|1|A|A|606
6FEC|1|A|G|607
*
6FEC|1|A|C|614
6FEC|1|A|G|615
6FEC|1|A|G|616
6FEC|1|A|U|617
6FEC|1|A|A|618
6FEC|1|A|A|619
6FEC|1|A|U|620
6FEC|1|A|U|621
6FEC|1|A|C|622
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- Messenger RNA (26-MER)
- Chain Q
- 40S ribosomal protein S23
- Chain V
- 40S ribosomal protein S30
- Chain g
- 40S ribosomal protein S3
Coloring options: