IL_6FEC_036
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_036 not in the Motif Atlas
- Geometric match to IL_4GXY_009
- Geometric discrepancy: 0.3731
- The information below is about IL_4GXY_009
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_49061.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
6FEC|1|A|U|797
6FEC|1|A|A|798
6FEC|1|A|C|799
*
6FEC|1|A|G|856
6FEC|1|A|A|857
6FEC|1|A|A|858
6FEC|1|A|U|859
6FEC|1|A|A|860
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain Q
- 40S ribosomal protein S23
- Chain X
- 40S ribosomal protein S7
- Chain a
- 40S ribosomal protein S15a
Coloring options: