IL_6FEC_042
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_042 not in the Motif Atlas
- Geometric match to IL_4V88_430
- Geometric discrepancy: 0.2545
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6FEC|1|A|G|924
6FEC|1|A|G|925
6FEC|1|A|C|926
6FEC|1|A|C|927
*
6FEC|1|A|G|1006
6FEC|1|A|A|1007
6FEC|1|A|A|1008
6FEC|1|A|U|1009
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 2
- Eukaryotic translation initiation factor 3 subunit C
- Chain Y
- 40S ribosomal protein S27
- Chain Z
- 40S ribosomal protein S13
- Chain i
- 40S ribosomal protein S3a
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