IL_6FEC_047

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_047 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.3595

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6FEC|1|A|C|1043
6FEC|1|A|G|1044
6FEC|1|A|A|1045
6FEC|1|A|A|1046
6FEC|1|A|G|1047
*
6FEC|1|A|C|1063
6FEC|1|A|G|1064
6FEC|1|A|U|1065
6FEC|1|A|A|1066
6FEC|1|A|G|1067

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain j

40S ribosomal protein S14

Chain k

40S ribosomal protein S26