IL_6FEC_101
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6FEC|1|A|C|1327, 6FEC|1|A|U|1490, 6FEC|1|A|G|1493
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_101 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.2235
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6FEC|1|A|U|1325
6FEC|1|A|G|1326
6FEC|1|A|C|1327
6FEC|1|A|A|1328
6FEC|1|A|U|1329
6FEC|1|A|G|1330
6FEC|1|A|G|1331
*
6FEC|1|A|U|1488
6FEC|1|A|C|1489
6FEC|1|A|U|1490
6FEC|1|A|G|1491
6FEC|1|A|U|1492
6FEC|1|A|G|1493
6FEC|1|A|A|1494
6FEC|1|A|U|1495
6FEC|1|A|G|1496
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- Messenger RNA (26-MER)
- Chain J
- 40S ribosomal protein S29
- Chain g
- 40S ribosomal protein S3
- Chain h
- 40S ribosomal protein S20
- Chain t
- 40S ribosomal protein S10
Coloring options: