3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAAAG*CUAGUAGC
Length
13 nucleotides
Bulged bases
6FRK|1|5|A|1650, 6FRK|1|5|G|1654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_064 not in the Motif Atlas
Homologous match to IL_5TBW_028
Geometric discrepancy: 0.0773
The information below is about IL_5TBW_028
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.7
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6FRK|1|5|G|1522
6FRK|1|5|A|1523
6FRK|1|5|A|1524
6FRK|1|5|A|1525
6FRK|1|5|G|1526
*
6FRK|1|5|C|1648
6FRK|1|5|U|1649
6FRK|1|5|A|1650
6FRK|1|5|G|1651
6FRK|1|5|U|1652
6FRK|1|5|A|1653
6FRK|1|5|G|1654
6FRK|1|5|C|1655

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
Ribosomal protein uL4
Chain L
Ribosomal protein eL13
Chain N
Ribosomal protein L15
Chain a
Ribosomal protein uL15
Chain j
Ribosomal protein L37

Coloring options:


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