3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUCAUCAG*CUGGAG
Length
14 nucleotides
Bulged bases
6FRK|1|5|U|1930, 6FRK|1|5|C|1931, 6FRK|1|5|G|2055, 6FRK|1|5|A|2057
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_086 not in the Motif Atlas
Homologous match to IL_5TBW_051
Geometric discrepancy: 0.177
The information below is about IL_5TBW_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_27086.1
Basepair signature
cWW-tWW-L-tWW-cWW-L
Number of instances in this motif group
2

Unit IDs

6FRK|1|5|C|1926
6FRK|1|5|U|1927
6FRK|1|5|C|1928
6FRK|1|5|A|1929
6FRK|1|5|U|1930
6FRK|1|5|C|1931
6FRK|1|5|A|1932
6FRK|1|5|G|1933
*
6FRK|1|5|C|2053
6FRK|1|5|U|2054
6FRK|1|5|G|2055
6FRK|1|5|G|2056
6FRK|1|5|A|2057
6FRK|1|5|G|2058

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
Ribosomal protein uL6
Chain M
Ribosomal protein eL14
Chain O
Ribosomal protein uL13
Chain S
Ribosomal protein eL20
Chain m
Ribosomal protein eL40

Coloring options:


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