IL_6FTG_005
3D structure
- PDB id
- 6FTG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.1 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTG_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1588
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FTG|1|u|C|30
6FTG|1|u|U|31
6FTG|1|u|G|32
6FTG|1|u|A|33
6FTG|1|u|A|34
6FTG|1|u|U|35
6FTG|1|u|U|36
6FTG|1|u|U|37
*
6FTG|1|u|A|44
6FTG|1|u|U|45
6FTG|1|u|U|46
6FTG|1|u|A|47
6FTG|1|u|G|48
6FTG|1|u|U|49
6FTG|1|u|C|50
6FTG|1|u|A|51
6FTG|1|u|G|52
Current chains
- Chain u
- 28S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain j
- Ribosomal protein L37
- Chain o
- eL42
Coloring options: