IL_6FTG_093

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_093 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2221

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6FTG|1|u|C|2589
6FTG|1|u|G|2590
6FTG|1|u|A|2591
6FTG|1|u|U|2592
6FTG|1|u|C|2593
*
6FTG|1|u|G|2752
6FTG|1|u|G|2753
6FTG|1|u|G|2754
6FTG|1|u|A|2755
6FTG|1|u|G|2756

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain Z

60S ribosomal protein L27

Chain g

eL34