IL_6FTG_145

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6FTG|1|u|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_145 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1428

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6FTG|1|u|C|4582
6FTG|1|u|C|4583
6FTG|1|u|A|4584
6FTG|1|u|U|4585
*
6FTG|1|u|A|4717
6FTG|1|u|G|4718
6FTG|1|u|G|4719
6FTG|1|u|C|4720
6FTG|1|u|G|4721

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13