IL_6FTG_164

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6FTG|1|u|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_164 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1692

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6FTG|1|u|G|5000
6FTG|1|u|U|5001
6FTG|1|u|U|5002
*
6FTG|1|u|G|5045
6FTG|1|u|U|5046
6FTG|1|u|C|5047
6FTG|1|u|A|5048
6FTG|1|u|G|5049
6FTG|1|u|C|5050

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain d

eL31