IL_6FXC_138

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGUAG*CGCAGAGA

Length

13 nucleotides

Bulged bases

6FXC|1|Aa|A|710

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_138 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1431

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6FXC|1|Aa|U|692
6FXC|1|Aa|G|693
6FXC|1|Aa|U|694
6FXC|1|Aa|A|695
6FXC|1|Aa|G|696
*
6FXC|1|Aa|C|707
6FXC|1|Aa|G|708
6FXC|1|Aa|C|709
6FXC|1|Aa|A|710
6FXC|1|Aa|G|711
6FXC|1|Aa|A|712
6FXC|1|Aa|G|713
6FXC|1|Aa|A|714

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ak

30S ribosomal protein S11