IL_6FXC_141

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_141 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1289

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6FXC|1|Aa|G|896
6FXC|1|Aa|G|897
6FXC|1|Aa|A|898
6FXC|1|Aa|G|899
6FXC|1|Aa|U|900
6FXC|1|Aa|A|901
6FXC|1|Aa|C|902
6FXC|1|Aa|G|903
*
6FXC|1|Aa|U|914
6FXC|1|Aa|G|915
6FXC|1|Aa|A|916
6FXC|1|Aa|A|917
6FXC|1|Aa|A|918
6FXC|1|Aa|C|919

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Al

30S ribosomal protein S12