IL_6FXC_273
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_273 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.1454
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6FXC|1|BB|C|69
6FXC|1|BB|G|70
6FXC|1|BB|A|71
6FXC|1|BB|U|72
6FXC|1|BB|G|73
6FXC|1|BB|G|74
6FXC|1|BB|U|75
6FXC|1|BB|A|76
6FXC|1|BB|G|77
*
6FXC|1|BB|C|94
6FXC|1|BB|U|95
6FXC|1|BB|A|96
6FXC|1|BB|G|97
6FXC|1|BB|A|98
6FXC|1|BB|G|99
6FXC|1|BB|U|100
6FXC|1|BB|A|101
6FXC|1|BB|G|102
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 50S ribosomal protein L16
- Chain BT
- 50S ribosomal protein L25
- Chain BU
- 50S ribosomal protein L27
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