IL_6FXC_285

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAUUAG*CAACGAUG

Length

14 nucleotides

Bulged bases

6FXC|1|Ba|U|252, 6FXC|1|Ba|C|288

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FXC_285 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1753

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6FXC|1|Ba|C|250
6FXC|1|Ba|A|251
6FXC|1|Ba|U|252
6FXC|1|Ba|U|253
6FXC|1|Ba|A|254
6FXC|1|Ba|G|255
*
6FXC|1|Ba|C|285
6FXC|1|Ba|A|286
6FXC|1|Ba|A|287
6FXC|1|Ba|C|288
6FXC|1|Ba|G|289
6FXC|1|Ba|A|290
6FXC|1|Ba|U|291
6FXC|1|Ba|G|292

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bl

30S ribosomal protein S12

Chain Bq

30S ribosomal protein S17