IL_6FXC_294
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6FXC|1|Ba|A|540, 6FXC|1|Ba|U|542
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FXC_294 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2231
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FXC|1|Ba|G|523
6FXC|1|Ba|U|524
6FXC|1|Ba|G|525
6FXC|1|Ba|C|526
6FXC|1|Ba|C|527
6FXC|1|Ba|A|528
6FXC|1|Ba|G|529
*
6FXC|1|Ba|C|536
6FXC|1|Ba|G|537
6FXC|1|Ba|G|538
6FXC|1|Ba|U|539
6FXC|1|Ba|A|540
6FXC|1|Ba|A|541
6FXC|1|Ba|U|542
6FXC|1|Ba|A|543
6FXC|1|Ba|C|544
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bc
- 30S ribosomal protein S3
- Chain Bd
- 30S ribosomal protein S4
- Chain Bl
- 30S ribosomal protein S12
- Chain Bv
- Ribosome hibernation promotion factor
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