IL_6GB2_019
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 6GB2|1|BA|A|479
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GB2_019 not in the Motif Atlas
- Homologous match to IL_5J7L_276
- Geometric discrepancy: 0.174
- The information below is about IL_5J7L_276
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
6GB2|1|BA|G|478
6GB2|1|BA|A|479
6GB2|1|BA|G|480
*
6GB2|1|BA|C|588
6GB2|1|BA|C|589
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B3
- 'Mitochondrial ribosomal protein L30
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain BW
- Mitochondrial ribosomal protein L22
- Chain Bg
- Mitochondrial ribosomal protein L43
- Chain Bo
- Mitochondrial ribosomal protein L52
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