IL_6GB2_028

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAAAG*CCAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_028 not in the Motif Atlas

Geometric match to IL_5TBW_074

Geometric discrepancy: 0.3066

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6GB2|1|BA|U|786
6GB2|1|BA|U|787
6GB2|1|BA|A|788
6GB2|1|BA|A|789
6GB2|1|BA|A|790
6GB2|1|BA|A|791
6GB2|1|BA|G|792
*
6GB2|1|BA|C|998
6GB2|1|BA|C|999
6GB2|1|BA|A|1000
6GB2|1|BA|A|1001

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BE

ICT1

Chain BR

Mitochondrial ribosomal protein L17