IL_6GB2_056

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCAGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GB2_056 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.2235

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6GB2|1|BA|C|1454
6GB2|1|BA|C|1455
6GB2|1|BA|C|1456
6GB2|1|BA|A|1457
6GB2|1|BA|G|1458
6GB2|1|BA|U|1459
6GB2|1|BA|A|1460
6GB2|1|BA|C|1461
*
6GB2|1|BA|G|1466
6GB2|1|BA|G|1467
6GB2|1|BA|A|1468
6GB2|1|BA|C|1469
6GB2|1|BA|A|1470
6GB2|1|BA|A|1471
6GB2|1|BA|G|1472

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BC

Translation initiation factor IF-2, mitochondrial

Chain BO

Mitochondrial ribosomal protein L14