IL_6GC0_116

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAG*CCUUUAAUG

Length

27 nucleotides

Bulged bases

6GC0|1|A|U|2111, 6GC0|1|A|G|2116, 6GC0|1|A|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC0_116 not in the Motif Atlas

Homologous match to IL_5J7L_397

Geometric discrepancy: 0.3725

The information below is about IL_5J7L_397

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54737.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

6GC0|1|A|C|2103
6GC0|1|A|C|2104
6GC0|1|A|U|2105
6GC0|1|A|U|2106
6GC0|1|A|G|2107
6GC0|1|A|A|2108
6GC0|1|A|U|2109
6GC0|1|A|G|2110
6GC0|1|A|U|2111
6GC0|1|A|G|2112
6GC0|1|A|U|2113
6GC0|1|A|A|2114
6GC0|1|A|G|2115
6GC0|1|A|G|2116
6GC0|1|A|A|2117
6GC0|1|A|U|2118
6GC0|1|A|A|2119
6GC0|1|A|G|2120
*
6GC0|1|A|C|2178
6GC0|1|A|C|2179
6GC0|1|A|U|2180
6GC0|1|A|U|2181
6GC0|1|A|U|2182
6GC0|1|A|A|2183
6GC0|1|A|A|2184
6GC0|1|A|U|2185
6GC0|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains